publications
Publications in reversed chronological order. Generated by jekyll-scholar.
2021
- 10 years later: cloud computing is closing the performance gapCompanion of the 2021 ACM/SPEC International Conference on Performance Engineering (ICPE21 Companion) 2021
- Parallel string graph construction and transitive reduction for de novo genome assembly2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS) 2021
2020
- BELLA: berkeley efficient long-read to long-read aligner and overlapperbioRxiv 2020
- The parallelism motifs of genomic data analysisPhilosophical Transactions of the Royal Society A 2020
- LOGAN: high-performance GPU-based x-drop long-read alignmentIn 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS) 2020
- Distributed many-to-many protein sequence alignment using sparse matricesInternational Conference for High Performance Computing, Networking, Storage, and Analysis (SC’20) 2020
2019
- diBELLA: distributed long read to long read alignmentIn Proceedings of the 48th International Conference on Parallel Processing 2019
2017
- HUGenomics: a support to personalized medicine researchIn 2017 IEEE 3rd International Forum on Research and Technologies for Society and Industry (RTSI) 2017
2016
- On how to improve FPGA-based systems design productivity via SDAccelIn 2016 IEEE international parallel and distributed processing symposium workshops (IPDPSW) 2016
- ProFAX: A hardware acceleration of a protein folding algorithmIn 2016 IEEE 2nd International Forum on Research and Technologies for Society and Industry Leveraging a better tomorrow (RTSI) 2016