software
Growing collection of publicy available software.
- diBELLA.2D: Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly.
- BELLA: Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper.
- LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment.
- PASTIS: Distributed Protein Sequence Aligner.
- XAVIER: High-Performance X-Drop Adaptive Banded Pairwise Alignment.
- GALATIC: Sparse Matrix-Sparse Matrix Multiplication CUDA Template Library over Arbitrary Semiring.
- CombBLAS.starter: CombBLAS Starter Code for a Beginner.
- PyPlotCollection: Collection of Python Script to Plot Data for Publication.